HMMER Example

HMMER is a tool used to search for specific sequences in biological applications.

This example is a basic biosequencing simulation using HMMER on Rescale.


Import Job Setup Get Job Results


Simulation Code HMMER 3.1b1
Analysis Type Biosequence analysis
Description A DNA sequence is searched against a database for exact and near matches.
Suggested Hardware Titanium / 1 core
Command
hmmbuild MADE1.hmm MADE1.sto; nhmmer MADE1.hmm dna_target.fa > MADE1.out
Estimated Run Time 1 minutes