NAMD is a molecular dynamics code designed for large biomolecular systems. It is able to parallelize and scale to hundreds and thousands of cores, and can be used to run large simulations in biomolecular modeling.
This is a simple example of a molecular dynamics simulation.
|Simulation Code||NAMD v2.11 tcp|
|Analysis Type||Molecular dynamics|
|Description||Molecular dynamics (MD) simulations to compute atomic trajectories by solving empirical force field equations that approximate the actual atomic force in biopolymer systems.|
|Suggested Hardware||Titanium / 1 cores|
|Estimated Run Time||2 minutes|